rs31390857 SNP Detail

Summary

• ID
  rs31390857
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45434373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTATTCCTGT GTGGCTGGGT GAATCTGTAC CAACCAGAGT
  CTGGACTGCC TATGCATTCT CAGTGTGGTC TGTCCCTGTG TCTTTGTGTG TGACGTGTCC
  K
  TGTCTCCGTT TGCTGATGGC TGTCCACCTT TGTATGAGAG GCGCTTGTGA AGGTTCCTGT
  GACATGTCTC AGCTGTGTGT GGGCTGCGTG GGCTTGCTA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46027762	mCV24380997	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31390857					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45434373 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19088	CpG island 19088			780 bp distal
Cpgi19089	CpG island 19089			434 bp proximal
Cpgi19090	CpG island 19090			1529 bp proximal
Lmtk3	lemur tyrosine kinase 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr646575	regulatory region 646575			992 bp distal
Rr646576	regulatory region 646576			291 bp distal
Rr646577	regulatory region 646577			within coordinates
Tssr66636	transcription start site region 66636			1217 bp downstream
Tssr66637	transcription start site region 66637			1005 bp downstream
Tssr66638	transcription start site region 66638			382 bp upstream
Tssr66639	transcription start site region 66639			621 bp upstream
Tssr72472	transcription start site region 72472			77 bp downstream