rs31391788 SNP Detail

Summary

• ID
  rs31391788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52220779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGAAGGG ATAACTTATA
  TCTCAGAACC TAAATCCAAA CTCCTTCACG CCACCAGTTC AAAGCTTTTG AATGGATCTT
  TTTTCCCATG ATATATGTTT ATATCTCACT GCCTAGCTAT GGGTGTCCCT GGATTCTACC
  AAATGATTTG AGCATAAGGA ATCTTAAGTT CCAATAAGGG AAGGTTCAAT CGTTCCAGAC
  Y
  GAGAATGGGT GAACTAGATT TGATGAGTAA GGTTTACAGA AAATCCTCTG AAAAAAAACT
  TCCCTAGAAG GCCTCTACAA CCTGCTGCTG GGCAGTATTT ACCAGGCAGA CACCAGGGGG
  TAGTAAAATC TCACTCTCTT GGTCATTAAT AACAAGGAGA CTGAAGAGTC TACCTTAACT
  GGAAGGTTGG AGATAGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39285161	mCV24787465	ABI	CRAMUS_MOUSE	f	SNP	T		C
ss139498605	ENSMUSSNP5665031	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss324626433	CHEV_14_52602997	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31391788					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52220779 () rs orientation: forward

Symbol	Name	Function Class
Arhgef40	Rho guanine nucleotide exchange factor 40	1397 bp upstream
Cpgi6430	CpG island 6430	1062 bp proximal
Gm62631	predicted gene, 62631	within coordinates
Rr491846	regulatory region 491846	106 bp proximal
Rr491847	regulatory region 491847	1026 bp proximal
Rr491848	regulatory region 491848	1620 bp proximal
Tssr125437	transcription start site region 125437	1166 bp upstream
Tssr125438	transcription start site region 125438	1204 bp upstream
Tssr125439	transcription start site region 125439	1374 bp upstream
Tssr125440	transcription start site region 125440	1504 bp upstream
Tssr125441	transcription start site region 125441	1535 bp upstream