rs31392445 SNP Detail

Summary

• ID
  rs31392445
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58546037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTT TATACACTAG GCCCTGTTCT
  S
  GGTTAAACTC TAATTTATTA AAAAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss45028824	mCV22736706	ABI	CRAMUS_MOUSE	f	SNP	C		G
ss49403509	NES12780662	PERLEGEN	MM_PANEL2	f	SNP		C		C	C	G	C
ss149138159	ENSMUSSNP6684570	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs31392445					SNP	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49403509	NES12780662	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58546037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi280	CpG island 280	1634 bp distal
Gm15834	predicted gene 15834	within coordinates
Orc2	origin recognition complex, subunit 2	1923 bp upstream
Rr396056	regulatory region 396056	1629 bp downstream
Rr411447	regulatory region 411447	1780 bp distal
Rr411448	regulatory region 411448	1895 bp distal
Rr411449	regulatory region 411449	1711 bp distal
Rr411450	regulatory region 411450	1186 bp distal
Tssr6780	transcription start site region 6780	1716 bp downstream
Tssr11783	transcription start site region 11783	1936 bp upstream
Tssr11784	transcription start site region 11784	1913 bp upstream