rs31392825 SNP Detail

Summary

• ID
  rs31392825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79786022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAGGGTTAC AGTCCAAGTG AGGGACATGG GGCTGGAGCT CAAGGAGGGG CCTGGAGGTG
  GGAATTGGAG CAGAGACTAT GGAGGAACAT TAGTTACTGC GTTCCACCTG ACTTGCTCGG
  CTTGCTTATA GGTGCAAGGA CCACTTGCCC TAGGGAGGCA GTGCCTACAG TGGGGCTGGG
  GCTCTCATGT CAATCATTAG CCAACAAAAT GCTCCAGCAG GCCAATCTGC TGGAAGCAGT
  TTCTTCCCCG AGGTTCTCTC TTTCCAATTT TCTCTAGTTT GTCTCTAGTT AGCAACAACA
  R
  CAACAACAAC AACAACAACA ACAAACCCTA ACCAGGTCAA ACACCCTAGA AATTTATGCA
  TTCTCCAGAA ACCCTGGTTT TGGACCACCA TTCAGCAGTT TTGTAAATGC TAAATGGTTT
  AGTAGCCTAT AAAGGGGTTC TAACCAGACA AAGTGTGGCA AACACAGGCC TGACCATGGC
  AAACATTGTA AGGCAATCAG GTTTTGCCCT TTTACCTCTT CTCTCCCTTG CTAAAACCCA
  TCACATTCCT AAAGCTAGCC TCTGAGGTCT ATCCCCTTAT TTGCTCACCA ATTCATTCCT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45530236	mCV23428641	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss135376898	ENSMUSSNP7065279	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31392825					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79786022 () rs orientation: forward

Symbol	Name	Function Class
D3Mit310	DNA Segment, Chr 3, Massachusetts Institute of Technology 310	1878 bp proximal
Gm36569	predicted gene, 36569	within coordinates
Rr578599	regulatory region 578599	28 bp distal
Rr578600	regulatory region 578600	108 bp proximal
Rr578601	regulatory region 578601	494 bp proximal
Tssr29594	transcription start site region 29594	1432 bp downstream
Tssr29595	transcription start site region 29595	1409 bp downstream