rs31392982 SNP Detail

Summary

• ID
  rs31392982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103683770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAG GGTGCATTAA AGTCAGCCTC
  R
  CACAGGTTAG GCAAGCCCTG TATCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45530305	mCV22763100	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss135564166	ENSMUSSNP1846481	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320858423	CHEV_3_103580377	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31392982					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103683770 () rs orientation: forward

Symbol	Name	Function Class
Gm15886	predicted gene 15886	within coordinates
Hipk1	homeodomain interacting protein kinase 1	within coordinates
Rr69881	regulatory region 69881	370 bp distal
Rr69882	regulatory region 69882	831 bp proximal
Rr367513	regulatory region 367513	1545 bp upstream
Tssr34850	transcription start site region 34850	355 bp downstream
Tssr34851	transcription start site region 34851	1681 bp downstream
Tssr34852	transcription start site region 34852	1702 bp downstream
Tssr34853	transcription start site region 34853	1734 bp downstream
Tssr34854	transcription start site region 34854	1803 bp downstream
Tssr34855	transcription start site region 34855	1855 bp downstream