rs31393919 SNP Detail

Summary

• ID
  rs31393919
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165917146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACACAAA CCTCATTTTC
  ACGAACCAAT CATGTGCTAA AGGCCCTACC TCTGAATTGT CTTTACTCTA AATTTAGAGA
  TAAGACTTGA TGACATAACT TGGGAGACAC ACATAACACT CCCTCTAAAT TCCTCCATGT
  GTAAAACATG CTTTGTAGAT TTTCATAGCA GTCTCTAAGG TGAGTGGAAT TTAGCTGAAC
  K
  ATTGCTTGTC ATTTGGCTTT CCAATGGGAT TTCCAAAGGA AAAGCTGTGG AATTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTTT ATTGCCCCTC TTTGGGGGTC
  ACAGGGGCTG AGAGCAGAAA GCTGTCTCCG TGGCTTTCCT GTGTGAGGCC TTGTCTGCAA
  CGGACTCTTG TTTGAGAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49733347	NES13042108	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31393919					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49733347	NES13042108	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165917146 () rs orientation: forward

Symbol	Name	Function Class
Rr422527	regulatory region 422527	593 bp distal
Rr422528	regulatory region 422528	144 bp proximal