rs31394469 SNP Detail

Summary

• ID
  rs31394469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185318054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGTTTAG AATGAGGGCG
  GGGAGGTGCT TGGAATCCCT TTGTTCTTTC TTTCCCTGCT CACTAGACCA AGGTCACTCC
  AAACCAAAGA TCTCTGGACT AGAATTTATT AGCTTACGGA AACCCTGTCT TCCTTATCAC
  CTCCCATGAC ACCTCCCATG TCATTGTGCC AAAATGACAT GTCTGAATCC ACATGGATTC
  R
  CTGTGTGGAG GATTTTCTTC AGGTTCCTGA CTGCATGGCC CACAGCTGTG GTTTCCTGAT
  GTCCATCCAG TCCGTGCCAG GTCCCCTTGC CCCATTGCCT GCTTTAAGCA GAAATCAGTT
  TCAACTGTCT TATAGGTCTC CTGCCTCAGT CTCCATCCCC ATTACAAGTG TTCCTCACTA
  ATCTTGCTTC AGTGACCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45029051	mCV24549057	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss146436924	ENSMUSSNP6783139	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320177536	CHEV_1_187409736	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31394469					SNP	A	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185318054 () rs orientation: forward

Symbol	Name	Function Class
Rr425414	regulatory region 425414	468 bp distal
Rr425415	regulatory region 425415	1789 bp proximal