rs31394594 SNP Detail

Summary

• ID
  rs31394594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134486778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACA GTGGCAGGCA GTCTTTCCAC
  R
  AGTTTGGTTG CTTTCTAGAT TAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45028669	mCV23638920	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss319983172	CHEV_1_136455617	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31394594					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134486778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	1980 bp distal
Cpgi773	CpG island 773	846 bp proximal
Gm57134	predicted gene, 57134	1938 bp upstream
Kdm5b	lysine demethylase 5B	1138 bp upstream
Rr367005	regulatory region 367005	1780 bp downstream
Rr367006	regulatory region 367006	1001 bp upstream
Rr418945	regulatory region 418945	1949 bp distal
Rr418948	regulatory region 418948	1587 bp distal
Rr418949	regulatory region 418949	648 bp proximal
Tssr8904	transcription start site region 8904	1117 bp upstream
Tssr8905	transcription start site region 8905	1150 bp upstream
Tssr8906	transcription start site region 8906	1174 bp upstream