rs31394990 SNP Detail

Summary

• ID
  rs31394990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121575298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGAGGA GTGTAAGAGA
  GAGAAGGAGA GATGGACATG GTCAAAGCAT GATATATTCA TGCGTGGAAA TGTCCCAGTG
  AAACTCTCTA ATTCGTACAA TTTATACGTG AAATATTTCA AAGCACACTT GTGAGCTGAG
  ATGGTTTAGT GTTCTTAAAT GTCGTATGAA CGTGTGAAGA AACTGCATGA CAAAATGCAC
  Y
  GATTTCATGG GAAGTCATTC CTGACTCTGA GAACCCCCGC AAGGAAGCTT CATGGAGTTG
  GAGATGGATG GGCAACTCTG AAGAGAGTTG TAGCTCTGGA AGCTGACCGA CTCATGCAGA
  TCTGACTTAG CCAGGTATGT TAACTGATGG CGTGTGTCGG TTTGAAAACT AGGCGACTAG
  CTATGAACTC CTGTCTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47047770	NES11258601	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31394990					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47047770	NES11258601	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121575298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2295	CpG island 2295	10 bp proximal
Kics2	KICSTOR subunit 2	537 bp upstream
Rr440270	regulatory region 440270	54 bp proximal
Tssr96047	transcription start site region 96047	522 bp upstream
Tssr99640	transcription start site region 99640	918 bp downstream