rs31394993 SNP Detail

Summary

• ID
  rs31394993
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121575502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAGTTGGAG ATGGATGGGC AACTCTGAAG
  AGAGTTGTAG CTCTGGAAGC TGACCGACTC ATGCAGATCT GACTTAGCCA GGTATGTTAA
  CTGATGGCGT GTGTCGGTTT GAAAACTAGG CGACTAGCTA TGAACTCCTG TCTGGCTTCC
  W
  TCTGACAACC TTGGTGGTGT AAGGGCTGAT AAGGCTTCTG GCTCTGATGG ACACGCAAGA
  GCTGACGTCA AGCCCGTGTG ACGTCATCCG CGCTAAGGCG CTGGCCTCCA GGGGCCTCCG
  GAGGGCAGGA GACGTCCCGG GGCTGGAGGT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47047773	NES11258603	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T		T	A	A		A
ss323514839	CHEV_10_121176653	CHEVERUD	SCREENING_POP	f	SNP										A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31394993					SNP	A	A	A	A	A	A	A	A	T	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47047773	NES11258603	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121575502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2295	CpG island 2295	within coordinates
Kics2	KICSTOR subunit 2	333 bp upstream
Rr440270	regulatory region 440270	within coordinates
Tssr96047	transcription start site region 96047	318 bp upstream
Tssr99640	transcription start site region 99640	714 bp downstream