rs31395992 SNP Detail

Summary

• ID
  rs31395992
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136506614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGCACCTCAA TGAATGCACA GCTACAAAGC TCTGATGTTC ATGGCACAGC CGTGTGTCAT
  CTATAGCCAA GGGTGGTTGT AAAGATGCTT AGAAATACCT TTATGTGCCC TGAGGTTGGG
  CTGCACACCT TTGATCCCAG CCCTTGGGAG AAAGAGGCAG GAGGATCTCT GTGAGTTTGA
  GGCTAGCCTG GTCTACAGAG CGTGTTCCAG GACAGATAGA CAGGAGTATA CAGAGAAATC
  TTATCTGGAA AAAAGAAAAA GAAAGAAACA CACACACACA CACACACACA CACACACACA
  S
  ACACAGAGAG AGAGAGAGAG AGAGAGAGAC TTCATGCCAT CCAATGGCTT CCACTTTTTA
  AGTGTTCCAG CTAACTTATA AAAAGAAACT GTCTAGGGCT GGAGAGATGG CTCAGCCATT
  AAAAGCACTA TCTGCTCTTC CCGAGGTCCT GAGTTCAATT CCCAGCAACC ACGTGGTGGC
  TCACAATCAT CTGTAATGGG ATCTGATGCT TCTGGGATGT CCAAAAACAG AGACAGTATA
  CTCACATACA TAAAATATAT AAATCTTTTA AAAGGAGAAA AGAAAAAAAA AAAAAAAAGG
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45029371	mCV23236765	ABI	CRAMUS_MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31395992					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136506614 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm33994	predicted gene, 33994	within coordinates
Gm57131	predicted gene, 57131	within coordinates
Rr367011	regulatory region 367011	628 bp upstream
Rr419471	regulatory region 419471	413 bp distal
Rr419472	regulatory region 419472	467 bp proximal
Rr419473	regulatory region 419473	591 bp proximal
Tssr9072	transcription start site region 9072	764 bp upstream
Tssr9073	transcription start site region 9073	790 bp upstream
Tssr13942	transcription start site region 13942	1653 bp downstream
Tssr13943	transcription start site region 13943	1678 bp downstream
Tssr13944	transcription start site region 13944	1705 bp downstream