rs31396061 SNP Detail

Summary

• ID
  rs31396061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:166080306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACGTTGAA GATCCAGATG TAGGAGACAA GTGGGAACCT
  AGAGAGGCCA CACCAGGACT GCAGCTCAGA TCACACCCCT GAGCAGGGTG GCCACCCAGC
  Y
  TCCAACCACC ACACCTGGCC CCGGCCCCTG ATGCTGCTGC TACCTCCGGG CAAAACTGAT
  TGTCCGGTGT GCCTGCCTCT TGCACTACTT TATCCAGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45029478	mCV23451387	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss146015788	ENSMUSSNP753431	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31396061					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166080306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi965	CpG island 965	1061 bp proximal
Gm70596	predicted gene, 70596	1030 bp downstream
Ildr2	immunoglobulin-like domain containing receptor 2	1402 bp upstream
Rr422555	regulatory region 422555	966 bp proximal
Rr422556	regulatory region 422556	1375 bp proximal
Rr422557	regulatory region 422557	1467 bp proximal
Tssr9868	transcription start site region 9868	1313 bp upstream
Tssr9869	transcription start site region 9869	1358 bp upstream
Tssr9870	transcription start site region 9870	1422 bp upstream
Tssr9871	transcription start site region 9871	1449 bp upstream