rs31396211 SNP Detail

Summary

• ID
  rs31396211
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10109000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATT CTAATATATT TAATTTTTTT
  Y
  GTAACACGGT TCTTAAAGAC TTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45028877	mCV23216229	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148572958	ENSMUSSNP1567316	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss319632129	CHEV_1_10028856	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31396211					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10109000 () rs orientation: forward

Symbol	Name	Function Class
Cops5	COP9 signalosome subunit 5	616 bp upstream
Cpgi31	CpG island 31	332 bp distal
Cpgi32	CpG island 32	746 bp proximal
Cspp1	centrosome and spindle pole associated protein 1	within coordinates
Rr395966	regulatory region 395966	1223 bp upstream
Rr407692	regulatory region 407692	859 bp distal
Rr407693	regulatory region 407693	503 bp distal
Rr407694	regulatory region 407694	23 bp distal
Rr407695	regulatory region 407695	508 bp proximal
Rr407696	regulatory region 407696	901 bp proximal
Rr407697	regulatory region 407697	1021 bp proximal
Tssr4	transcription start site region 4	547 bp downstream
Tssr5924	transcription start site region 5924	987 bp upstream
Tssr5925	transcription start site region 5925	1022 bp upstream
Tssr5926	transcription start site region 5926	1049 bp upstream
Tssr10955	transcription start site region 10955	881 bp upstream
Tssr10956	transcription start site region 10956	844 bp upstream
Tssr10957	transcription start site region 10957	807 bp upstream
Tssr10958	transcription start site region 10958	606 bp upstream
Tssr10959	transcription start site region 10959	1232 bp downstream