rs31396295 SNP Detail

Summary

• ID
  rs31396295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72886830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCAGCTGT TAACACTGGT
  ACCCAGTTCT GTACCTGGTG TGGAAGAGCT GACTCCTTCC TCCCTTAGCT GAACACCATC
  TGGTTTCTAA CAACTTAGAC AAGGTAGTAT ACCTTACCTT TTGCAGTCAC TGCTGGCTCT
  TTCCAACTTG TAGTATTGCC TAGGAGGGGG ACCCGTGGTG CCCTCTATAC TGTATGGACT
  Y
  CTCTGTACTG AGGGGTCCAT TGGGAACTAT GTGCCTTGAA TCGTATCTAT TAAGAACTAT
  CCCATTTGGG GACAGGGACT GCAAAATGTG TTGAAAAAAC CTCTATGCAC TCACCCAGAT
  TTTTTTTTGG TTTGTTTTTG GGACCAGATT TTGCTGGGTA ACCATGGCTG TCCTGGAATT
  CACTCTTTAG ACCAGGTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45028502	mCV23053075	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss144663560	ENSMUSSNP3868674	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs31396295					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72886830 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	1408 bp upstream
Tssr7322	transcription start site region 7322	1437 bp upstream
Tssr7323	transcription start site region 7323	1480 bp upstream
Tssr7324	transcription start site region 7324	1529 bp upstream
Tssr7325	transcription start site region 7325	1544 bp upstream
Tssr7326	transcription start site region 7326	1574 bp upstream
Tssr7327	transcription start site region 7327	1603 bp upstream
Tssr7328	transcription start site region 7328	1906 bp upstream
Tssr7329	transcription start site region 7329	1941 bp upstream
Tssr7330	transcription start site region 7330	1955 bp upstream
Tssr12178	transcription start site region 12178	1444 bp downstream
Tssr12179	transcription start site region 12179	1487 bp downstream
Tssr12180	transcription start site region 12180	1551 bp downstream
Tssr12181	transcription start site region 12181	1572 bp downstream
Tssr12182	transcription start site region 12182	1615 bp downstream
Tssr12183	transcription start site region 12183	1636 bp downstream