rs31396667 SNP Detail

Summary

• ID
  rs31396667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:127407824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCCTAAAATT CAATTCCCAA CAACCACATG AAGGTTCACC ACCATCTGCA CAGCTACAGT
  GTACTCATAT ACATAAAATA AATAAACAAA TCTTTAAAAA AAAAAACCAC TGAAATATTG
  TAAGAACATA TGTTCATTTC AATCCCAGGT GTGGGATATG GGGCTGCTTC AGATGTCCAC
  AGCAGCTGAC TGTGATTTGC CTCGTGCTCT GGCAGGGGGA TGGTTTTGCA AGTAGCAGAT
  AGTTTCTGCG ACTGTGTGAT GTGGGATGAG AATACACACA CACACACACA CACACACATA
  Y
  ACACACACAC ACATATATAC ATATCACCAA AAGATGGGGT CAGTGGTGGT GGGCTGGTTG
  TTGGTTGGCT GCTGTTGGTT GTACTTTGTT GTGCAAAGAA GAAAGAAATC CTGTTGGTGC
  TGAGGTGAAG ATCAAACTTG CCCCAAGGAA CCTGAAGCTG CTACTGAGCA GGAAGTAGTC
  TAACGATAAT GCTGCCCCCT TTCCCCTCTA TCCTATTTTC TCTCCTATCG GGTGTTAGGG
  GGTTGAAAGA GTGGAAGAAA GAAGAACCCG CTAAGCACAA CACTGGCGAC ATCCTTGGGC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss46028342	mCV25229396	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss145882827	ENSMUSSNP314247	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs31396667					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127407824 () rs orientation: forward

Symbol	Name	Function Class
Stx1b	syntaxin 1B	Intron
Tssr75036	transcription start site region 75036	1660 bp upstream
Tssr75037	transcription start site region 75037	1618 bp upstream
Tssr75038	transcription start site region 75038	1384 bp upstream
Tssr75039	transcription start site region 75039	1322 bp upstream