rs31396787 SNP Detail

Summary

• ID
  rs31396787
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:104840418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGTAATCCT CCTCTTCCAT GTATGTGCTC TCTTCCTTGA CAAAGTGGCC ACTAAGGGTG
  ATTCCCTTCA CTGAGCACTC TGGTGTCAGA TAATTCCAGA GCAGGATATG GATCCTGAGA
  ATATTTGTGG CTGCATACCC TGAGGGTGGA CACTTGCAAT GAGATACTAC TGCATGCTCA
  GATCCAACAC TAGTGATACT GAGTTTAATT ACTTGTCAAA TATTAAGCAT AGAATTTTAA
  AATCGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  R
  TACTGGCTGG TGAAAGCATT TCTGTAACCT GATAACTCTC CTGCGACTGG CTCAGTCACA
  GACTTTAGTA AGAGATGGGG TGAGGCAACG GTGGATTTAC TTCTCTAAGG ACAGATCTGG
  CTTTGAAGAC AGTCAAAAGT CACTGGAGAC TGAGCCTGGT GATACTGGAC TGGCAATGAC
  CTAAATATAA CTTTGAAACA AATATGTGTA AGAACTAACC TATTTTACTT GAAGAATCAC
  AACCATGCAG TACCTTCTTG GAAATCCTGG TTACTAGGAC AAATGCTTAA TTGCTTTTAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46521754	mCV23827523	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31396787					SNP	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:104840418 () rs orientation: forward

Symbol	Name	Function Class
Atrx	ATRX, chromatin remodeler	803 bp downstream
Rr693125	regulatory region 693125	1496 bp distal