rs31396893 SNP Detail

Summary

• ID
  rs31396893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:78961846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGAAGTAT TCTGGGCTGC ACCTTCTTGC GTTTGTGTGC
  AGGAACAGGC AGCCAAACAT TGTAGCAAGT AATGTTTTTG GTGTTGATTT TTAAAGAGAA
  Y
  AGATTGTATA CACTGTTAAA ATTGGGTTTT GCTTCCCAAA ATTGTGGTTG TGCTCTGGTG
  TTACGAGAGA AATCAAAAGT GAAGGCTTCT CCCGAATAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss46521465	mCV24448801	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss325899159	CHEV_X_77163579	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs31396893					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:78961846 () rs orientation: forward

Symbol	Name	Function Class
Rr395274	regulatory region 395274	1574 bp upstream
Tssr163724	transcription start site region 163724	215 bp downstream