rs31398010 SNP Detail

Summary

• ID
  rs31398010
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54869825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAC TGCACCACAT CGGCGGGGCC
  R
  GGTGGCCTGG GCTGGCGTGG CGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss39286127	mCV23591134	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss139566998	ENSMUSSNP3943785	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs31398010					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54869825 () rs orientation: forward

Symbol	Name	Function Class
Cdh24	cadherin-like 24	within coordinates
Cpgi6468	CpG island 6468	within coordinates
Rr289238	regulatory region 289238	1776 bp proximal
Rr295556	regulatory region 295556	1896 bp proximal
Rr299444	regulatory region 299444	within coordinates
Tssr128611	transcription start site region 128611	79 bp upstream
Tssr128612	transcription start site region 128612	54 bp upstream