rs31399092 SNP Detail

Summary

• ID
  rs31399092
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156267047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT GGAGGAGTAG TTTAATAGGA
  S
  AGTATGCCAC AAAGCCTTGA ATCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45029113	mCV23089496	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss145796611	ENSMUSSNP2472663	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs31399092					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156267047 () rs orientation: forward

Symbol	Name	Function Class
Rr31351	regulatory region 31351	1387 bp distal
Rr396421	regulatory region 396421	1862 bp downstream
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	218 bp upstream
Tssr14442	transcription start site region 14442	158 bp upstream
Tssr14443	transcription start site region 14443	1905 bp downstream
Tssr14444	transcription start site region 14444	1923 bp downstream