rs31399232 SNP Detail

Summary

• ID
  rs31399232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:7885836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAT TCTTAGTGAA AGAAAGCAGC
  Y
  ATTCCATGAA GTTTCTTCCA TCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss39285318	mCV24308262	ABI	CRAMUS_MOUSE	f	SNP	T	C						T
ss62102171	NES17163347	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	T	C	T	C	C	T	C	C
ss139097633	ENSMUSSNP3609555	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31399232					SNP	T	C	C	C	C	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62102171	NES17163347	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:7885836 () rs orientation: forward

Symbol	Name	Function Class
Gm62777	predicted gene, 62777	1304 bp upstream
Rr389213	regulatory region 389213	1822 bp upstream