rs31400608 SNP Detail

Summary

• ID
  rs31400608
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165593021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCATACACT CATTAATACC CAATGCACCT GTGGTGCACC
  TGCACTCTGC ACGCGTGCGC ACACACACGC AGGATAAAAT TTTAGAGAAC AAAGTCTATT
  K
  ATTTGCTCTT TAAGTTTCTA ACTCTTCTTG AAAAGGTTAA AGACCTAGCA GCACTGGGAG
  TGGGGGTGGG GCTATATTTT TCTGAGAGAC AAAAGTAAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49734873	NES13052213	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	T	T	G	G	T	G	G	T
ss146006579	ENSMUSSNP5462347	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31400608					SNP	G	G	G	G	G	G	T	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49734873	NES13052213	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165593021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi955	CpG island 955	1116 bp distal
Creg1	cellular repressor of E1A-stimulated genes 1	within coordinates
Rr28876	regulatory region 28876	within coordinates
Rr396502	regulatory region 396502	1613 bp downstream
Tssr9817	transcription start site region 9817	1668 bp downstream
Tssr9818	transcription start site region 9818	394 bp upstream
Tssr9819	transcription start site region 9819	656 bp upstream
Tssr9820	transcription start site region 9820	1708 bp upstream
Tssr9821	transcription start site region 9821	1820 bp upstream
Tssr14792	transcription start site region 14792	1155 bp downstream