rs31400674 SNP Detail

Summary

• ID
  rs31400674
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165507100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAG GAAAAAAAAT AAATCATTTT
  W
  AAAAAGAAAT CGAATGAGGG GGTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	LG/J	PWD/PhJ	SM/J
ss49735310	NES13054185	PERLEGEN	MM_PANEL2	f	SNP	T		T	T			A
ss146004976	ENSMUSSNP2697132	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		A
ss320087045	CHEV_1_167609662	CHEVERUD	SCREENING_POP	f	SNP						T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	LG/J	PWD/PhJ	SM/J
rs31400674					SNP	T	T	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735310	NES13054185	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165507100 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr13801	regulatory region 13801	within coordinates
Rr13802	regulatory region 13802	1501 bp proximal
Tssr14776	transcription start site region 14776	688 bp upstream
Tssr14777	transcription start site region 14777	591 bp upstream