rs31401070 SNP Detail

Summary

• ID
  rs31401070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:155617170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT TGTACCAGCG GTTCTGCGAG
  Y
  TTTGGCCATT GCCGCGAAAG GTAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss45029789	mCV24605522	ABI	CRAMUS_MOUSE	f	SNP	T	T				C	T
ss49518354	NES12776251	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T		T	T	C	T	T
ss145778978	ENSMUSSNP2457919	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31401070					SNP	T	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49518354	NES12776251	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155617170 () rs orientation: forward

Symbol	Name	Function Class
Cpgi888	CpG island 888	within coordinates
Lhx4	LIM homeobox protein 4	within coordinates
Rr28763	regulatory region 28763	within coordinates
Tssr9541	transcription start site region 9541	1085 bp upstream
Tssr14367	transcription start site region 14367	577 bp downstream
Tssr14368	transcription start site region 14368	701 bp downstream