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rs31401274 SNP Detail
Summary
  • ID
    rs31401274
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:165591969 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTAGCTCGCT GGGGAGAGCG
    TGGGTCTTAG AGATAAGACT TTTGAACCCA GCTCACATGA CTGTCTCTTC TGGCCTGCGC
    TGGCTAGGCG GAGGTTGTAG CATCCCAGAT GTTGGGGAAC TACCAGGAAG TTCCTACTTA
    CCCTGTTACT GGTCTAAGCG CTTGGGGTAA ATTCTTTGCC AGTACCTGGA GCACTTCACA
    Y
    CCTTCAGATA GTCAGGCGTC CTCTTTAGGC GCTGTCTCTG CATAAACTGC ACTCTTGTGA
    TCTAAAGGCA TACAGATTGT TGGATAGTTT AGCGTTTGGC TTATGTGACT TCGGAGATTC
    TCTTCCCTAC CTTTACCTAT CAGCAGTGGG AAACTACTAC ACAGCATTAT AGTTGACTGC
    GGACCTGGCT CTGCTTACAG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss49734879 NES13052247 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs31401274 SNP C C C C C C T C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49734879 NES13052247 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:165591969 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi955 CpG island 955 64 bp distal
Creg1 cellular repressor of E1A-stimulated genes 1 within coordinates
Gm70530 predicted gene, 70530 within coordinates
Rr28876 regulatory region 28876 within coordinates
Rr396502 regulatory region 396502 561 bp downstream
Tssr9817 transcription start site region 9817 616 bp downstream
Tssr9818 transcription start site region 9818 1446 bp upstream
Tssr9819 transcription start site region 9819 1708 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory