rs31401275 SNP Detail

Summary

• ID
  rs31401275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165591863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGTACC TGAGTCCACT
  GCAGCAAGCC GTGAGCGACC TGCAGGTGAG CGGGAGCGCG GCGCGGTTTC CCAGACCCGG
  CAGAGCAGGA AACCAGCGTC TCCAGTTTAG CTCGCTGGGG AGAGCGTGGG TCTTAGAGAT
  AAGACTTTTG AACCCAGCTC ACATGACTGT CTCTTCTGGC CTGCGCTGGC TAGGCGGAGG
  Y
  TGTAGCATCC CAGATGTTGG GGAACTACCA GGAAGTTCCT ACTTACCCTG TTACTGGTCT
  AAGCGCTTGG GGTAAATTCT TTGCCAGTAC CTGGAGCACT TCACACCCTT CAGATAGTCA
  GGCGTCCTCT TTAGGCGCTG TCTCTGCATA AACTGCACTC TTGTGATCTA AAGGCATACA
  GATTGTTGGA TAGTTTAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49734880	NES13052245	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31401275					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49734880	NES13052245	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165591863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi955	CpG island 955	within coordinates
Creg1	cellular repressor of E1A-stimulated genes 1	within coordinates
Rr28876	regulatory region 28876	within coordinates
Rr396502	regulatory region 396502	455 bp downstream
Tssr9817	transcription start site region 9817	510 bp downstream
Tssr9818	transcription start site region 9818	1552 bp upstream
Tssr9819	transcription start site region 9819	1814 bp upstream