rs31401280 SNP Detail

Summary

• ID
  rs31401280
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165590674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTTTCGG GATAGCATTT
  GAAATGTAAA TGAAGAAAAT ACCTAATATT TTTTTAAGAA AGAAAAAAGA GTAGCGGCTA
  AGCACGGACT GCTTCATAAC TCTGTTAGGA AGAGAGAGAG CTGCAGAGAG GTGTGGCCTG
  ATTCAGACTA TAGGATGGGT GGGGCTTAAA AGATTCTAAC AGTGGCCACA GTTTTAAAAC
  R
  ACGCAAACAC GTTTGCATAC ATTTTCTAAC TCCCTAGGGT AGCAGAATGA AAATCCTCCA
  CGGGCTTGGA GGATCTGCCA GAATAAATGC ATGAAACCAC GAATTTAACC GAGCTAGATG
  ACTTGACAGG TCTCAAATGG ACAAGGTCAA AGTCTTGAGT GGGATACCGA AAACTAACAA
  AGTGGCTTTA TCTGAAGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss49734885	NES13052272	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A		A	G
ss320087060	CHEV_1_167693236	CHEVERUD	SCREENING_POP	f	SNP								G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs31401280					SNP	G	G	G	G	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49734885	NES13052272	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165590674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi955	CpG island 955	452 bp proximal
Creg1	cellular repressor of E1A-stimulated genes 1	653 bp upstream
Rr13809	regulatory region 13809	1074 bp distal
Rr28876	regulatory region 28876	within coordinates
Rr396502	regulatory region 396502	433 bp upstream
Tssr9817	transcription start site region 9817	647 bp upstream