rs31401282 SNP Detail

Summary

• ID
  rs31401282
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165590549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT AAGAAAGAAA AAAGAGTAGC
  K
  GCTAAGCACG GACTGCTTCA TAACT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49734887	NES13052266	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	T	T	T	G	T	G	G	T	G
ss146006540	ENSMUSSNP2235047	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31401282					SNP	G	G	G	G	G	G	G	T	T	T	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49734887	NES13052266	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165590549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi955	CpG island 955	577 bp proximal
Creg1	cellular repressor of E1A-stimulated genes 1	778 bp upstream
Rr13809	regulatory region 13809	949 bp distal
Rr28876	regulatory region 28876	51 bp proximal
Rr396502	regulatory region 396502	558 bp upstream
Tssr9817	transcription start site region 9817	772 bp upstream