rs31401461 SNP Detail

Summary

• ID
  rs31401461
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165505872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAATTGT CCAGTATAGA
  GACAGAGGCT AACAGAAGGA TAAAACTTAA TTATTTTAAA TAAATGTTTG AGTTCACAAG
  CCTGCCTAAC AACTCTGGCA AAACACTGCC CAGCCCTGAA GAGTGCTGTG AGCCTAGGTA
  TACAGAGACC TCACCTGGCA AACTGACGCA GGGTGTTTCC CTACCCGCCA AGAACAGCCT
  S
  GGCACTTACA CAAACTGTGC CAGGCGGCTG TCACCCACCT GCACATTTGT CCAGAAGCAG
  CTGTTCCTTC TCTGTCCTAC CTTGTCTTAG ACTCGTGCAT TCAAGCTTGC TGTAGCCTGT
  GCCCTGCACC TCAAAGTACT CAGGGCATGC CAAGAAATAG CTCCTTTCAT AACGGAGGGT
  ACTGTGGAAG ATGTCCATTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49735327	NES13054269	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31401461					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735327	NES13054269	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165505872 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr13801	regulatory region 13801	929 bp proximal
Tssr14776	transcription start site region 14776	519 bp downstream
Tssr14777	transcription start site region 14777	615 bp downstream