rs31402090 SNP Detail

Summary

• ID
  rs31402090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165505362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCATAGAT GAGGACTTTC ACAGTCCCTG TAGGGAACAG
  ACAGGGAAAG GGCTCATCTG AAAATGACAG ATCTGGCAGA CTCAGCGCAC AGCTGAGGGC
  Y
  TGTCTGGAAG CCAGGGGCCC CAGGCTTATG GTGTCATCAG AGGCTAGTGA ACAGAAGGTA
  GGAAGCTGAA GACTTTTCCC CGTCAGTCAA TATGTATCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49735336	NES13054260	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		T	T	C	T	T	C
ss146004893	ENSMUSSNP7211652	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31402090					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735336	NES13054260	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165505362 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr13801	regulatory region 13801	1439 bp proximal
Tssr14776	transcription start site region 14776	1029 bp downstream
Tssr14777	transcription start site region 14777	1125 bp downstream