rs31402092 SNP Detail

Summary

• ID
  rs31402092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165504931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAGAACA GATTTCCCAA
  GGACCAGGCT TTTTGCCTGC CAGCCAGCTG CTGCCTCTCC TGTTACAGCA GCCTCCTCCT
  GGCTCCCTGT GGGCTGGAGC CAGCACAGCC AGGAATAGGG GTTTTATCAG GACTTCTCAG
  GATGTCCCAT GCTTGGGGTG CCCTCAGAAG TGAGTGGAAC TGAGTCCCAG AGTCCCTAAT
  R
  TTGAGAGTCT CACAAAGAGT GATGTGGGGA GGAGAAAGTC CCTTAAAATA TCTTCGGTCT
  GAGTTGTGGA CCTAGTTCAC AAGCAGAAGA ACCTACTGGT AATTCCAGTT GCTACAGTGC
  CCTGAGCACC TTCCAAATAC CAACCCATCT ACGGACACAG CTTTGTAGAA CTTATGCAAC
  ACAATAGAGT CTATCAATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49735338	NES13054257	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	A		G	A	G	G
ss320087042	CHEV_1_167607493	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31402092					SNP	G	G	G	G	A	G	G	G	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735338	NES13054257	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165504931 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr13801	regulatory region 13801	1870 bp proximal
Tssr14776	transcription start site region 14776	1460 bp downstream
Tssr14777	transcription start site region 14777	1556 bp downstream