rs31402555 SNP Detail

Summary

• ID
  rs31402555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72321740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGCACACT GGGTGGCTCA
  CACTCCAGTT CCAGGGGATC TGCCACTTCC AGCCTTCATG GGCACCTGTA CTCCCACTCA
  CAGGCCCTCC TCTGCCTCCC AATACACATA TATAATTAAA AATACAACAA AACTTTAAAA
  GAACTTTTTT TCCCATATTC TCTCATGGAA GGCAATCCAA TGATAAATAC AGCAGTACAA
  Y
  GTTCACTTCT CTTTTAGGTG TAGGAAGTAT TTCCCTAGGG ACATACCCCA GGACTCTCAC
  AGCATCTCCA GGGCTGAGTG GCCTTATATT TACAGTCATG CCACAATACT CTGTTGGCCG
  ACCCCAGAAC TGGTGTAGTG TTTGCCCAAT GCAAACTTAC TCAAAAAGAG GTTCAACAAC
  TAGCAATCCA CAGAAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss45029244	mCV24093618	ABI	CRAMUS_MOUSE	f	SNP		C			T	T
ss51274578	NES14276970	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C			T	T	C	T	T
ss144651897	ENSMUSSNP7187054	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs31402555					SNP	T	C	T	C	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51274578	NES14276970	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72321740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	1455 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Tmem169	transmembrane protein 169	1814 bp upstream
Tssr114	transcription start site region 114	1691 bp downstream
Tssr115	transcription start site region 115	1707 bp downstream
Tssr116	transcription start site region 116	1724 bp downstream
Tssr7298	transcription start site region 7298	1786 bp upstream
Tssr12164	transcription start site region 12164	1643 bp downstream
Tssr12165	transcription start site region 12165	1667 bp downstream