rs31402974 SNP Detail

Summary

• ID
  rs31402974
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51624415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACGTTAGG AAGCAAGGTC
  TGGTTGGAGT AAATAGGTCA TTGGGGTTGG GCCTTTTGAA GCATGCTGGA GCTCCAACCA
  CTTCCTGTCT TTCTGTTTCC TGACAGCTGT AAGGTAAAGG GCCTCCTATG TCACAGGCTT
  TCAACACTGT GGTATTTTGC TTCACCTAAT GCTGAGAAGT AGTGGTCCAG CTGACCTTGG
  S
  CTGAAACCTT GAACTCAGAG AAGCCTGTCC TCCTTTATAT TGTATGTCAC ATGTTTTATC
  ACAGTGACAA AGCTGTGACA TGGGTGGAGT TCTGTCATAT ACACAGGGGG AAGGCACAGA
  AAGCTGCTAT AGAAATTGTC CTGTAAGCCT GATAAGGTCA GATCTCCACC CATTTGGGCT
  TCTCTGACAG CTCTTTGCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45029635	mCV23215704	ABI	CRAMUS_MOUSE	f	SNP		C	G					G	G
ss47349896	NES11071027	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G		G	G	G	G	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31402974					SNP	C	C	G	G	G	G	G	G	G	G	G	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47349896	NES11071027	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51624415 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Gm70189	predicted gene, 70189	132 bp upstream
Rr366895	regulatory region 366895	83 bp downstream
Rr410721	regulatory region 410721	1072 bp distal
Rr410722	regulatory region 410722	within coordinates
Rr410723	regulatory region 410723	143 bp proximal
Tssr6632	transcription start site region 6632	96 bp upstream
Tssr6633	transcription start site region 6633	157 bp upstream
Tssr11575	transcription start site region 11575	265 bp upstream
Tssr11576	transcription start site region 11576	6 bp downstream