rs3140341 SNP Detail

Summary

• ID
  rs3140341
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54044793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCAAGAAT GTGGAGAATG TTTGACTCCT AAAAGAAATG
  GAAATGTATC GTATTCCTCA TTTTACTATG GCATCATGTA GGAATTAACT AAAGGGATAC
  M
  CTCAGGTAGA TGTCCTAATG TGTGGAGCCA CTGTGCTTTA GAGGCACTGC ACTCAGGACT
  ACAGTGTAGC TTGACCAAAC CCAACCTCTC AATTTCCCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39206210	mCV23063652	ABI	CRAMUS_MOUSE	f	SNP	A	A						C	A
ss62397034	NES17240629	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	C	A		C	C	A	A		C
ss324632411	CHEV_14_54427011	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3140341					SNP	A	A	A	A	A	A	A	C	A	C	A	A	C	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62397034	NES17240629	PERLEGEN	MM_PANEL	f	SNP	A/C
ss139548913	ENSMUSSNP158725	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54044793 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Rr492110	regulatory region 492110	656 bp distal
Rr492111	regulatory region 492111	917 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Trav17	T cell receptor alpha variable 17	221 bp downstream
Tssr125501	transcription start site region 125501	864 bp downstream
Tssr125502	transcription start site region 125502	816 bp downstream