rs3140344 SNP Detail

Summary

• ID
  rs3140344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54045910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAATGAAA TGAATATCAT AATTTAAAAA AATCAAGAAG
  CCATCTCCTC ATGCTGGAGG GAAAGGCGCT CCACAAAGAT TGAAACCTCA AAAGGGAAGG
  R
  AGAGTGGCAG AAACAGTAAA TCTACAGCAA ATACAAGAAT CAAATCTTCT CTTTTTGAAG
  CAGGTATATT AAGATAAAAT GATACACATA GGCTGCCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss139548928	ENSMUSSNP4781887	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss324632416	CHEV_14_54428128	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs3140344					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54045910 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Rr492110	regulatory region 492110	1773 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Trav17	T cell receptor alpha variable 17	1338 bp downstream
Tssr125501	transcription start site region 125501	1981 bp downstream
Tssr125502	transcription start site region 125502	1933 bp downstream