rs31403738 SNP Detail

Summary

• ID
  rs31403738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165483173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGTCTGGGC TTTTCTGTCC GAGCCTATCT TCATCTGCTA
  CCCTCTCCTC AGAGGCTGTC CCTTCAGTGG CCTTCCCAGT GTCTGTATGC TCTCCCGGGG
  Y
  TGTCTCTTCC CGTGGGCTTC CGCACCCATT CTCAGCCTCT GGGCTGCCGG TTTGCGATGG
  CGCCTGGACC TCTGGATGAC CCTGACTAGC TGTGTCTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ
ss45060432	mCV22778974	ABI	CRAMUS_MOUSE	f	SNP	T	T	T		C
ss49735354	NES13054893	PERLEGEN	MM_PANEL2	f	SNP				C		T
ss146004335	ENSMUSSNP3944577	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ
rs31403738					SNP	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735354	NES13054893	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165483173 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr372388	regulatory region 372388	728 bp upstream
Rr422410	regulatory region 422410	1544 bp distal
Rr422411	regulatory region 422411	1787 bp distal
Rr422412	regulatory region 422412	195 bp distal
Tssr9810	transcription start site region 9810	1718 bp downstream
Tssr9811	transcription start site region 9811	318 bp downstream
Tssr9812	transcription start site region 9812	65 bp downstream