rs31403739 SNP Detail

Summary

• ID
  rs31403739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165482119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGCGCACC CAGCTCATTG GTATTGTTTT AAGCCACTAA
  GCCTGTGGCA ATGTGTCTGG AAACCCTAAT AAGAGAGGTG AGACATTTTG CCAAGAGTAG
  R
  CCCAGCCAGC CAACTACCCA CCAGTCTACC CACCCTTTGG TTACTGTGTA AAGAATGAAC
  CCTATCAAGG ATGGGAGGAA GGCAGACAAG AGGCTACTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49735355	NES13054902	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31403739					SNP	A	A	A	A	A	A	A	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735355	NES13054902	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165482119 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr372388	regulatory region 372388	1782 bp upstream
Rr422410	regulatory region 422410	490 bp distal
Rr422411	regulatory region 422411	733 bp distal
Rr422412	regulatory region 422412	838 bp proximal
Tssr9810	transcription start site region 9810	664 bp downstream
Tssr9811	transcription start site region 9811	720 bp upstream
Tssr9812	transcription start site region 9812	960 bp upstream
Tssr14774	transcription start site region 14774	1960 bp upstream