rs31403981 SNP Detail

Summary

• ID
  rs31403981
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170673136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA GAGAGACAGA GAGACAGAGA
  S
  AGAGAGGCTA AAACAAACAA ACAAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45030369	mCV23198786	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G	G
ss146145962	ENSMUSSNP1604578	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		G
ss320113907	CHEV_1_172775698	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31403981					SNP	C	C	C	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170673136 () rs orientation: forward

Symbol	Name	Function Class
Atf6	activating transcription factor 6	Intron
Rr423131	regulatory region 423131	888 bp distal
Rr423132	regulatory region 423132	985 bp distal
Rr423133	regulatory region 423133	within coordinates
Tssr14928	transcription start site region 14928	220 bp downstream