rs31404320 SNP Detail

Summary

• ID
  rs31404320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165471037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTATATGAGC TCCTGTTTCA AAACTAACTA TTTATTATTA
  TTATTATTAA TTATTTTAAT TATTACTCCA AAATCCACAC ACAAAGTTTA TTGAAACAGG
  Y
  CAGGAAGTGC AAGTCTGAAG CATGTTGACA CCGATAAACA ACAAAGGTCG ATCAGCAAAT
  AAATCATTTT GCTGGCTACT GCTCTACTAA GGCTCAACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45103809	mCV22722286	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		C
ss49735436	NES13055279	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	C	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31404320					SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735436	NES13055279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165471037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	478 bp distal
Gm18407	predicted gene, 18407	431 bp downstream
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	1763 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	1126 bp upstream
Rr396497	regulatory region 396497	1789 bp downstream
Rr396498	regulatory region 396498	1084 bp downstream
Rr422408	regulatory region 422408	1884 bp distal
Rr422409	regulatory region 422409	101 bp distal