rs31404322 SNP Detail

Summary

• ID
  rs31404322
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165470279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTCTGGA GCCGGATTGC
  GGGTGCCGCC CGCTCACAGC GGAACCGAGC TGGGTTCGCC GACGGGCATC CGGTCCTCGG
  CCACCGCCGG GAACCGGCTT GGAAGGGATC AGGCCGGAAG AGAATCAGTG CCTGAGGCCC
  GGAGCGCGGC GAGGGAAGGG AACGCGCCGC AGCCTTGCTC AGGGGACGAA ATCTTGGGGT
  R
  CTAGGAGCAG TGATCTTCCC CGAAATTCCA ACTTATTAAG TAAGCAGTTT GTACTGAAGC
  CATTTGATGC TCAGTCCCTG AACCACTCCT GTTGTCCCCT TGTGCAATGG AAGGGACAGA
  GGTCCAGAGA CCTTGTGGAG TTCCCGGAAG GACCCCCGCG CTCCTGGAAG GAGGACCATA
  GGGGCTGGAG CGGGGAGACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49735438	NES13055277	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31404322					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735438	NES13055277	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165470279 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	within coordinates
Gm18407	predicted gene, 18407	1189 bp downstream
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	1005 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	368 bp upstream
Rr396497	regulatory region 396497	1031 bp downstream
Rr396498	regulatory region 396498	326 bp downstream
Rr422408	regulatory region 422408	1126 bp distal
Rr422409	regulatory region 422409	within coordinates