rs31404323 SNP Detail

Summary

• ID
  rs31404323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165470199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTGCCGCC CGCTCACAGC GGAACCGAGC TGGGTTCGCC
  GACGGGCATC CGGTCCTCGG CCACCGCCGG GAACCGGCTT GGAAGGGATC AGGCCGGAAG
  R
  GAATCAGTGC CTGAGGCCCG GAGCGCGGCG AGGGAAGGGA ACGCGCCGCA GCCTTGCTCA
  GGGGACGAAA TCTTGGGGTA CTAGGAGCAG TGATCTTCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45030605	mCV23519539	ABI	CRAMUS_MOUSE	f	SNP		A						G
ss49735439	NES13055276	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	G	A	A	G	A	A	G	A
ss146004036	ENSMUSSNP3388201	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31404323					SNP	A	A	A	A	A	A	G	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735439	NES13055276	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165470199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	within coordinates
Gm18407	predicted gene, 18407	1269 bp downstream
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	925 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	288 bp upstream
Rr396497	regulatory region 396497	951 bp downstream
Rr396498	regulatory region 396498	246 bp downstream