rs31405111 SNP Detail

Summary

• ID
  rs31405111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18908657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATTTGT TTGTTTAATG
  TATGTAAGTA TACTGTTGCT ATCTTCAGAC ACACCAGAAG AGGGCATCCA ATCCCATTAC
  AGATGGTTGT GAGCCACCAT GTGGTTGCTG GGAATTGAAC TCAGGACCTC TGGACTATTG
  GTATGTCTGA AGACAGCTAC TGTGTACTCA TATAACATAA ATAAATCTTT TAAAAAACAA
  R
  AGAACAAGAA CAAATCAGGA ACAAGCATAT TTTCTGAAAT TGGGCCTTGT GGTATATGCC
  TATTAATCCC AGTACCAGAG GGTTTGGAGC AGGAATATTA GAAACTCATC AGACACCATT
  CTCTTAGCTA TGTAATGAGT TGGAGGCCAG CCTCAGGTAC ATGAGACCTA TATCAAAACA
  AACCATAGGT AGACTAGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss46029502	mCV25048170	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss148469558	ENSMUSSNP203240	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31405111					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18908657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18449	CpG island 18449	1538 bp distal
Cpgi18450	CpG island 18450	1562 bp proximal
Eml2	echinoderm microtubule associated protein like 2	1689 bp upstream
Gm71808	predicted gene, 71808	1367 bp downstream
Rr155270	regulatory region 155270	1257 bp distal
Rr155271	regulatory region 155271	57 bp distal
Rr167137	regulatory region 167137	1456 bp distal
Rr167138	regulatory region 167138	743 bp proximal
Tssr64790	transcription start site region 64790	1684 bp upstream
Tssr64791	transcription start site region 64791	1714 bp upstream
Tssr64792	transcription start site region 64792	1751 bp upstream
Tssr64793	transcription start site region 64793	1781 bp upstream
Tssr64794	transcription start site region 64794	1916 bp upstream