rs31405154 SNP Detail

Summary

• ID
  rs31405154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165470133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCCTCCC TTAAGGCTTC
  CGCGGGGCTG ACCTGGTCCG GAAACCATCT CGCGCGAACA GTTCTTTTGG TTCCGAGGCT
  CTGGGGCCCG GAACCCCTTC CCGCCGGGCC GAAGAAGGCC GGGAGGACGC GCCTTTGCCC
  AGAGGACGGC TCTGGAGCCG GATTGCGGGT GCCGCCCGCT CACAGCGGAA CCGAGCTGGG
  Y
  TCGCCGACGG GCATCCGGTC CTCGGCCACC GCCGGGAACC GGCTTGGAAG GGATCAGGCC
  GGAAGAGAAT CAGTGCCTGA GGCCCGGAGC GCGGCGAGGG AAGGGAACGC GCCGCAGCCT
  TGCTCAGGGG ACGAAATCTT GGGGTACTAG GAGCAGTGAT CTTCCCCGAA ATTCCAACTT
  ATTAAGTAAG CAGTTTGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss49735440	NES13055275	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C		T		T	C
ss146004033	ENSMUSSNP3725450	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss320086958	CHEV_1_167572695	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs31405154					SNP	T	T	T	T	C	T	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735440	NES13055275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165470133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	within coordinates
Gm18407	predicted gene, 18407	1335 bp downstream
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	859 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	222 bp upstream
Rr396497	regulatory region 396497	885 bp downstream
Rr396498	regulatory region 396498	180 bp downstream