rs31405158 SNP Detail

Summary

• ID
  rs31405158
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165470007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGCG CGAACAGTTC TTTTGGTTCC
  R
  AGGCTCTGGG GCCCGGAACC CCTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49735444	NES13055271	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G	A		G	G	G		G
ss320086957	CHEV_1_167572569	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31405158					SNP	G	G	G	G	A	G	A	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735444	NES13055271	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165470007 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	within coordinates
Gm18407	predicted gene, 18407	1461 bp downstream
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	733 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	96 bp upstream
Rr396497	regulatory region 396497	759 bp downstream
Rr396498	regulatory region 396498	54 bp downstream
Rr422408	regulatory region 422408	854 bp distal
Rr422409	regulatory region 422409	within coordinates