rs31405160 SNP Detail

Summary

• ID
  rs31405160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165469969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAATGA AACAACTTTA
  ATTTTCAATA TGTAAATTTT TTTCACGAAA AGAAAAAAAA AAGTAAAACC AGGGCTCGTC
  CGGGATTTGA ACCCGGGACC TCTCGCACCC GAAGCGAGAA TCATACCCCT AGACCAACGA
  GCCGCTCTCG GTGACGACGC TCTCAGGGCC TCCCTTAAGG CTTCCGCGGG GCTGACCTGG
  Y
  CCGGAAACCA TCTCGCGCGA ACAGTTCTTT TGGTTCCGAG GCTCTGGGGC CCGGAACCCC
  TTCCCGCCGG GCCGAAGAAG GCCGGGAGGA CGCGCCTTTG CCCAGAGGAC GGCTCTGGAG
  CCGGATTGCG GGTGCCGCCC GCTCACAGCG GAACCGAGCT GGGTTCGCCG ACGGGCATCC
  GGTCCTCGGC CACCGCCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49735446	NES13055269	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C		T	C	T	T		T
ss320086956	CHEV_1_167572531	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31405160					SNP	T	T	T	T	C	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735446	NES13055269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165469969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	within coordinates
Gm18407	predicted gene, 18407	1499 bp downstream
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	695 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	58 bp upstream
Rr396497	regulatory region 396497	721 bp downstream
Rr396498	regulatory region 396498	16 bp downstream