rs31405161 SNP Detail

Summary

• ID
  rs31405161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165469925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTTCAGA ATAGTTTCAC
  TGGGATCTTT GGATGAGATG CGTGAGAAAA ATGAAACAAC TTTAATTTTC AATATGTAAA
  TTTTTTTCAC GAAAAGAAAA AAAAAAGTAA AACCAGGGCT CGTCCGGGAT TTGAACCCGG
  GACCTCTCGC ACCCGAAGCG AGAATCATAC CCCTAGACCA ACGAGCCGCT CTCGGTGACG
  R
  CGCTCTCAGG GCCTCCCTTA AGGCTTCCGC GGGGCTGACC TGGTCCGGAA ACCATCTCGC
  GCGAACAGTT CTTTTGGTTC CGAGGCTCTG GGGCCCGGAA CCCCTTCCCG CCGGGCCGAA
  GAAGGCCGGG AGGACGCGCC TTTGCCCAGA GGACGGCTCT GGAGCCGGAT TGCGGGTGCC
  GCCCGCTCAC AGCGGAACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49735447	NES13055268	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G	A	A	G
ss146004012	ENSMUSSNP705189	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31405161					SNP	A	A	A	A	A	A	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735447	NES13055268	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165469925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	within coordinates
Gm18407	predicted gene, 18407	1543 bp downstream
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	651 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	14 bp upstream
Rr396497	regulatory region 396497	677 bp downstream
Rr396498	regulatory region 396498	within coordinates