rs31405163 SNP Detail

Summary

• ID
  rs31405163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165469590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGCAGCCG GGTTTAAACC ACCGTGCCTG GGCTTCTCCG
  TCGTGAAGCG GGGCTGCGGC TTCCAGGGAT CCTGGAACGT CGCAGTGCCA ATCCCCGACA
  Y
  TCATGCCACG TGTGTGAGCG TCCGTCCGGG TCTCCCAGGT TTCTTCATTG GGAGTGTGTT
  TCAGTGCCCT GCCCTGCTGA CCCACACGGA GGTCAGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45115124	mCV23519532	ABI	CRAMUS_MOUSE	f	SNP		C						T
ss49735449	NES13055313	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C	C	T	C	C	T	C
ss146004004	ENSMUSSNP1621500	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31405163					SNP	C	C	C	C	C	C	T	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735449	NES13055313	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165469590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	within coordinates
Gm18407	predicted gene, 18407	1878 bp downstream
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	316 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	250 bp downstream
Rr396497	regulatory region 396497	342 bp downstream
Rr396498	regulatory region 396498	62 bp upstream
Rr422408	regulatory region 422408	437 bp distal
Rr422409	regulatory region 422409	within coordinates