rs31405292 SNP Detail

Summary

• ID
  rs31405292
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172199015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGAACCC ACTTCTCAGA TTTCCAGATT GCTGTACAGA
  GCCTCGGGGA ATTTGTGATG TTTTGTTATG GTTTGGGCTG AGGCAGAACT CTGGCTGACA
  R
  CCACTATTTT GTTCCATCTC CTGGTGCCCT TCTGAGAAGT GCCAGCTATT TTATGAGGCA
  ATGCTGAGAG GAGAGGAACT TACATTCTGA TCTCTGCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss45029982	mCV24593848	ABI	CRAMUS_MOUSE	f	SNP		G				G	A
ss49752060	NES13028960	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		A	G	G	G	G
ss120009863	PARCsnp_1.19010	PARC_SEQ	INBRED	f	SNP						G	A
ss120013153	PARCsnp_1.08844	PARC_SEQ	INBRED	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs31405292					SNP	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752060	NES13028960	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172199015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	1992 bp distal
Cpgi1046	CpG island 1046	1479 bp distal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Tssr10190	transcription start site region 10190	963 bp downstream
Tssr10191	transcription start site region 10191	747 bp downstream
Tssr10192	transcription start site region 10192	567 bp downstream