rs31405884 SNP Detail

Summary

• ID
  rs31405884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165469552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCGAAGCG CGAGTGTAGG GACCGGGGAG CTTGGTAGTT
  TGCAGCCGGG TTTAAACCAC CGTGCCTGGG CTTCTCCGTC GTGAAGCGGG GCTGCGGCTT
  Y
  CAGGGATCCT GGAACGTCGC AGTGCCAATC CCCGACACTC ATGCCACGTG TGTGAGCGTC
  CGTCCGGGTC TCCCAGGTTT CTTCATTGGG AGTGTGTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45077292	mCV23519531	ABI	CRAMUS_MOUSE	f	SNP		C	C						T
ss49735450	NES13055312	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	C	C	T	C	C	T	C
ss146004001	ENSMUSSNP2722708	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31405884					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735450	NES13055312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165469552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	within coordinates
Gm18407	predicted gene, 18407	1916 bp downstream
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	278 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	288 bp downstream
Rr396497	regulatory region 396497	304 bp downstream
Rr396498	regulatory region 396498	100 bp upstream