rs31405888 SNP Detail

Summary

• ID
  rs31405888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165469307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAATAAA CGGTACTATA
  TATGAATGAT CACACGGGGG CGCCAGCTAA GAATTTCAAT AGACCTTTAT GATGACAGGA
  GAACCAGCTA CACATCGGCT CGTTGGTCTA GGGGTATGAT TCTCGCTTAG GGTGCGAGAG
  GTCCCGGGTT CAAATCCCGG ACGAGCCCTG TAGCTTTTTA ATTTTTCTTT TTTTTTGGTT
  R
  ATACGTTAAT GCACAGAAAC CTAAAATTGT TCCTGAAAAT CAAACAACAA AAACACCAAG
  CACACTTTAC ACTAAAGTAA CAATAAAAGG AATAACGTGG AAGCATAAAA GTTTTCCAGT
  CACGTCCTTT GCCTCGCTTA ATCCGATCGA AGCGCGAGTG TAGGGACCGG GGAGCTTGGT
  AGTTTGCAGC CGGGTTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49735454	NES13055308	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	A		G	A	G	G		G
ss320086955	CHEV_1_167571869	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31405888					SNP	G	G	G	G	A	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735454	NES13055308	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165469307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	84 bp proximal
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	33 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	533 bp downstream
Rr396497	regulatory region 396497	59 bp downstream
Rr396498	regulatory region 396498	345 bp upstream