rs31405889 SNP Detail

Summary

• ID
  rs31405889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165469193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAATAGG TCAGCATTAA
  ACTAGTAATG ATATCGTTGC GCTTTCTGGC TCACTTAATT GTCAAAGAAT AAAACAGAGA
  AAAGGGAAAA TTAAAATTGT AACATATAAA CCAAAGAAAA TAAACGGTAC TATATATGAA
  TGATCACACG GGGGCGCCAG CTAAGAATTT CAATAGACCT TTATGATGAC AGGAGAACCA
  R
  CTACACATCG GCTCGTTGGT CTAGGGGTAT GATTCTCGCT TAGGGTGCGA GAGGTCCCGG
  GTTCAAATCC CGGACGAGCC CTGTAGCTTT TTAATTTTTC TTTTTTTTTG GTTGATACGT
  TAATGCACAG AAACCTAAAA TTGTTCCTGA AAATCAAACA ACAAAAACAC CAAGCACACT
  TTACACTAAA GTAACAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49735455	NES13055340	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	A		G	A	G	G		A
ss320086954	CHEV_1_167571755	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31405889					SNP	G	G	G	G	A	G	G	G	G	A	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49735455	NES13055340	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165469193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	198 bp proximal
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	10 bp upstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	647 bp downstream
Rr396497	regulatory region 396497	within coordinates
Rr396498	regulatory region 396498	459 bp upstream